Repositories list

• DasLab.github.io

  Public
  Static Jekyll site for daslab.stanford.edu

  HTML

  •00 forks in DasLab/DasLab.github.io•00 stars in DasLab/DasLab.github.io•00 issues in DasLab/DasLab.github.io•00 pull requests in DasLab/DasLab.github.io•Updated Nov 3, 2026Nov 3, 2026

• cmuts-space

  Public
  cmuts — mutation counting for chemical mapping (mirror of Hugging Face Space daslab-stanford/cmuts)

  Python

  •

  MIT License

  •00 forks in DasLab/cmuts-space•00 stars in DasLab/cmuts-space•00 issues in DasLab/cmuts-space•00 pull requests in DasLab/cmuts-space•Updated Oct 20, 2026Oct 20, 2026

• cmuts

  Public
  High-throughput mutation and indel counting software

  cbioinformaticshdf5+ 9

  cbioinformaticshdf5rna-structurernahtslibshape-mapchemical-mappingmutational-profilingmap-seq+ 2

  C

  •

  MIT License

  •11 fork in DasLab/cmuts•44 stars in DasLab/cmuts•00 issues in DasLab/cmuts•11 pull request in DasLab/cmuts•Updated Oct 20, 2026Oct 20, 2026

• fld

  Public
  Fast Library Design for MaP-seq experiments

  C++

  •

  MIT License

  •11 fork in DasLab/fld•22 stars in DasLab/fld•00 issues in DasLab/fld•00 pull requests in DasLab/fld•Updated Oct 13, 2026Oct 13, 2026

• ubr

  Public
  Ultraplex-Bowtie2-RNAframework pipeline for analysis of SHAPE-MaP/DMS-MaP big library runs

  MATLAB

  •

  MIT License

  •11 fork in DasLab/ubr•33 stars in DasLab/ubr•00 issues in DasLab/ubr•00 pull requests in DasLab/ubr•Updated Oct 12, 2026Oct 12, 2026

• rmdb.github.io

  Public
  Static GitHub Pages site for the RNA Mapping Database (rmdb.stanford.edu)

  HTML

  •00 forks in DasLab/rmdb.github.io•11 star in DasLab/rmdb.github.io•00 issues in DasLab/rmdb.github.io•00 pull requests in DasLab/rmdb.github.io•Updated Sep 19, 2026Sep 19, 2026

• k1_tools

  Public
  Tools for the Kaggle 2025 RNA 3D structure prediction competition (k1)

  Python

  •00 forks in DasLab/k1_tools•00 stars in DasLab/k1_tools•00 issues in DasLab/k1_tools•00 pull requests in DasLab/k1_tools•Updated Jun 11, 2026Jun 11, 2026

• primerize.github.io

  Public
  Primerize static website — hosted on GitHub Pages at primerize.stanford.edu

  HTML

  •00 forks in DasLab/primerize.github.io•00 stars in DasLab/primerize.github.io•00 issues in DasLab/primerize.github.io•00 pull requests in DasLab/primerize.github.io•Updated May 21, 2026May 21, 2026

• Server_RMDB

  Public
  RNA Mapping Database

  JavaScript

  •

  Other

  •44 forks in DasLab/Server_RMDB•44 stars in DasLab/Server_RMDB•4444 issues in DasLab/Server_RMDB•00 pull requests in DasLab/Server_RMDB•Updated May 16, 2026May 16, 2026

• Server_Daslab-OLD

  Public
  Das Lab Website

  HTML

  •

  Other

  •33 forks in DasLab/Server_Daslab-OLD•11 star in DasLab/Server_Daslab-OLD•55 issues in DasLab/Server_Daslab-OLD•33 pull requests in DasLab/Server_Daslab-OLD•Updated May 15, 2026May 15, 2026

• daslab_tools

  Public
  Tools, mainly for cluster usage, for Das lab at Stanford

  Python

  •

  MIT License

  •00 forks in DasLab/daslab_tools•44 stars in DasLab/daslab_tools•00 issues in DasLab/daslab_tools•00 pull requests in DasLab/daslab_tools•Updated May 15, 2026May 15, 2026

• Server_Primerize

  Public archive
  Primerize PCR Assembly Design Server

  HTML

  •

  Other

  •11 fork in DasLab/Server_Primerize•22 stars in DasLab/Server_Primerize•00 issues in DasLab/Server_Primerize•00 pull requests in DasLab/Server_Primerize•Updated May 15, 2026May 15, 2026

• CASP16_NA

  Public
  Repositoty accompanying analysis of CASP16 nucleic acid predictions

  Jupyter Notebook

  •

  MIT License

  •00 forks in DasLab/CASP16_NA•11 star in DasLab/CASP16_NA•00 issues in DasLab/CASP16_NA•00 pull requests in DasLab/CASP16_NA•Updated Apr 21, 2026Apr 21, 2026

• rr_util

  Public
  Utilities for generating raw reads datasets for deep neural network training

  Python

  •

  MIT License

  •00 forks in DasLab/rr_util•00 stars in DasLab/rr_util•00 issues in DasLab/rr_util•00 pull requests in DasLab/rr_util•Updated Mar 2, 2026Mar 2, 2026

• m2_util

  Public
  Utilities to extra mutate-and-map 2D maps from big library sequencing runs

  Python

  •00 forks in DasLab/m2_util•00 stars in DasLab/m2_util•00 issues in DasLab/m2_util•00 pull requests in DasLab/m2_util•Updated Jan 26, 2026Jan 26, 2026

• Water-CryoEM-ribozyme

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks in DasLab/Water-CryoEM-ribozyme•11 star in DasLab/Water-CryoEM-ribozyme•00 issues in DasLab/Water-CryoEM-ribozyme•00 pull requests in DasLab/Water-CryoEM-ribozyme•Updated Dec 23, 2025Dec 23, 2025

• pdb_map

  Public
  Create datasets that bring together RNA 3D structures & chemical mapping

  Python

  •11 fork in DasLab/pdb_map•11 star in DasLab/pdb_map•00 issues in DasLab/pdb_map•00 pull requests in DasLab/pdb_map•Updated Nov 29, 2025Nov 29, 2025

• create_templates

  Public
  Create 3D templates (or solution) file for RNA.

  Python

  •

  Apache License 2.0

  •11 fork in DasLab/create_templates•00 stars in DasLab/create_templates•22 issues in DasLab/create_templates•00 pull requests in DasLab/create_templates•Updated Nov 2, 2025Nov 2, 2025

• Coronavirus_SL5_3D

  Public
  Accompanying the publication: Tertiary folds of the SL5 RNA from the 5’ proximal region of SARS-CoV-2 and related coronaviruses

  Jupyter Notebook

  •

  MIT License

  •00 forks in DasLab/Coronavirus_SL5_3D•11 star in DasLab/Coronavirus_SL5_3D•00 issues in DasLab/Coronavirus_SL5_3D•00 pull requests in DasLab/Coronavirus_SL5_3D•Updated Aug 1, 2025Aug 1, 2025

• rnet-inference

  Public
  Python

  •

  MIT License

  •00 forks in DasLab/rnet-inference•11 star in DasLab/rnet-inference•00 issues in DasLab/rnet-inference•00 pull requests in DasLab/rnet-inference•Updated May 30, 2025May 30, 2025

• RNA_multimer_2024

  Public
  Scripts accompanying publication of RNA multimer structures

  Jupyter Notebook

  •11 fork in DasLab/RNA_multimer_2024•00 stars in DasLab/RNA_multimer_2024•00 issues in DasLab/RNA_multimer_2024•00 pull requests in DasLab/RNA_multimer_2024•Updated Apr 18, 2025Apr 18, 2025

• KaggleOpenVaccine

  Public archive
  Jupyter Notebook

  •

  MIT License

  •77 forks in DasLab/KaggleOpenVaccine•5656 stars in DasLab/KaggleOpenVaccine•00 issues in DasLab/KaggleOpenVaccine•00 pull requests in DasLab/KaggleOpenVaccine•Updated Sep 11, 2024Sep 11, 2024

• CASP15_RNA_EM

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks in DasLab/CASP15_RNA_EM•33 stars in DasLab/CASP15_RNA_EM•22 issues in DasLab/CASP15_RNA_EM•00 pull requests in DasLab/CASP15_RNA_EM•Updated Aug 16, 2024Aug 16, 2024

• KaggleRibonanza

  Public
  Python

  •

  Other

  •00 forks in DasLab/KaggleRibonanza•11 star in DasLab/KaggleRibonanza•00 issues in DasLab/KaggleRibonanza•00 pull requests in DasLab/KaggleRibonanza•Updated Jun 15, 2024Jun 15, 2024

• big_library_design

  Public
  Python

  •

  MIT License

  •00 forks in DasLab/big_library_design•11 star in DasLab/big_library_design•2424 issues in DasLab/big_library_design•00 pull requests in DasLab/big_library_design•Updated Mar 5, 2024Mar 5, 2024

• DataPrepRibonanzaKaggle2023

  Public archive
  Scripts and example files -- data preparation for Kaggle Ribonanza competition 2023. To be publicly released after competition end.

  Shell

  •

  MIT License

  •00 forks in DasLab/DataPrepRibonanzaKaggle2023•00 stars in DasLab/DataPrepRibonanzaKaggle2023•00 issues in DasLab/DataPrepRibonanzaKaggle2023•00 pull requests in DasLab/DataPrepRibonanzaKaggle2023•Updated Feb 25, 2024Feb 25, 2024

• casp-rna

  Public archive
  Pipeline used to assess RNA in CASP15

  Jupyter Notebook

  •22 forks in DasLab/casp-rna•99 stars in DasLab/casp-rna•00 issues in DasLab/casp-rna•00 pull requests in DasLab/casp-rna•Updated Nov 15, 2023Nov 15, 2023

• RMDB_DataWrangle

  Public archive
  Wrangle RDATs from RMDB into single .csv for machine learning training

  MATLAB

  •

  MIT License

  •00 forks in DasLab/RMDB_DataWrangle•00 stars in DasLab/RMDB_DataWrangle•00 issues in DasLab/RMDB_DataWrangle•00 pull requests in DasLab/RMDB_DataWrangle•Updated Nov 10, 2023Nov 10, 2023

• Stanford_BIOC202_DataScience

  Public archive
  Support repository for Stanford BIOC202 data science bootcamp session

  Jupyter Notebook

  •

  MIT License

  •00 forks in DasLab/Stanford_BIOC202_DataScience•00 stars in DasLab/Stanford_BIOC202_DataScience•00 issues in DasLab/Stanford_BIOC202_DataScience•00 pull requests in DasLab/Stanford_BIOC202_DataScience•Updated Sep 19, 2023Sep 19, 2023

• RiboGraphViz

  Public
  Visualize global properties of large RNAs using GraphViz force-directed layout.

  Jupyter Notebook

  •

  MIT License

  •99 forks in DasLab/RiboGraphViz•2424 stars in DasLab/RiboGraphViz•22 issues in DasLab/RiboGraphViz•11 pull request in DasLab/RiboGraphViz•Updated Sep 7, 2023Sep 7, 2023