Issues

• Make position 1 non-adenine when adding padding on the 5' end

  DasLab/big_library_design#48 · Filter by author DigitalEmbrace opened on Sep 20, 2024

• Reset default pad and barcode structures using information from sequence read predictors.

  DasLab/big_library_design#47 · Filter by author rkretsch opened on Mar 1, 2024

• Limit GC content of pads and barcode

  DasLab/big_library_design#46 · Filter by author rkretsch opened on Mar 1, 2024

• Padding for short unpaired pads

  DasLab/big_library_design#45 · Filter by author rkretsch opened on Feb 29, 2024
  1

• Integrate sequence drop predictions

  DasLab/big_library_design#44 · Filter by author rkretsch opened on Feb 27, 2024

• Deprecate library preparation script

  DasLab/big_library_design#42 · Filter by author tkaragianes opened on Feb 16, 2024

• Better handling of input information

  DasLab/big_library_design#41 · Filter by author rkretsch opened on Nov 30, 2023

• Last folder empty

  DasLab/big_library_design#40 · Filter by author rkretsch opened on Nov 30, 2023

• Refactoring

  DasLab/big_library_design#39 · Filter by author rkretsch opened on Nov 30, 2023

• Padding should allow multi-stem

  DasLab/big_library_design#38 · Filter by author rkretsch opened on Oct 11, 2023

• Combine library after sbatch should be ordered

  DasLab/big_library_design#37 · Filter by author rkretsch opened on Sep 1, 2023
  1

• In windows alternate sequences are not labeled

  DasLab/big_library_design#36 · Filter by author rkretsch opened on Aug 30, 2023

• "hang" v "buffer"

  documentation
  DasLab/big_library_design#35 · Filter by author rkretsch opened on Aug 1, 2023

• save a log file

  DasLab/big_library_design#34 · Filter by author rkretsch opened on Jul 27, 2023

• Stress test and script rebarcoding

  for 1M aim
  DasLab/big_library_design#32 · Filter by author rkretsch opened on Jul 11, 2023
  

• Standardize padding with eterna padding code

  DasLab/big_library_design#25 · Filter by author rkretsch opened on Jun 2, 2023

• For long barcode, use choose random instead of get all

  enhancement
  DasLab/big_library_design#20 · Filter by author rkretsch opened on May 2, 2023
  3

• Allow code to mutate away loop in barcode if it is causing problems

  enhancementquestion
  DasLab/big_library_design#18 · Filter by author rkretsch opened on Apr 27, 2023
  1

• For stem-loop barcodes, allow loop to be barcoded/random too

  enhancementquestion
  DasLab/big_library_design#16 · Filter by author rkretsch opened on Apr 26, 2023
  1

• Indexing

  documentationenhancement
  DasLab/big_library_design#14 · Filter by author rkretsch opened on Apr 26, 2023
  1

• Robustness of padding code

  documentationenhancementfor 1M aim
  DasLab/big_library_design#11 · Filter by author rkretsch opened on Apr 25, 2023
  3

• Label regions in figures

  enhancement
  DasLab/big_library_design#9 · Filter by author rkretsch opened on Apr 23, 2023

• Add more base-pair-probability matrix generation options.

  enhancementgood first issue
  DasLab/big_library_design#7 · Filter by author rkretsch opened on Apr 23, 2023

• Mutate-rescue

  enhancement
  DasLab/big_library_design#1 · Filter by author rkretsch opened on Apr 23, 2023