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Build against the current libbdsg: C++20, and link jansson #82

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Merged
glennhickey merged 1 commit into from
Sep 24, 2026
Merged

Build against the current libbdsg: C++20, and link jansson #82

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4 changes: 2 additions & 2 deletions include.mk
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Original file line number Diff line number Diff line change
Expand Up @@ -33,7 +33,7 @@ ifdef DISABLE_JEMALLOC
endif

CFLAGS += -I ${sonLibPath} -I ${halPath} -I ${halIncPath}
CXXFLAGS += -std=c++14 -I ${sonLibPath} -I ${halPath} -I ${halIncPath} -I ${libbdsgPath}/include -UNDEBUG
CXXFLAGS += -std=c++20 -I ${sonLibPath} -I ${halPath} -I ${halIncPath} -I ${libbdsgPath}/include -UNDEBUG
basicLibs = ${halPath}/libHal.a ${sonLibPath}/stPinchesAndCacti.a ${sonLibPath}/sonLib.a ${sonLibPath}/cuTest.a ${libbdsgPath}/lib/libbdsg.a ${libbdsgPath}/lib/libhandlegraph.a ${libbdsgPath}/lib/libsdsl.a ${libbdsgPath}/lib/libdivsufsort.a ${libbdsgPath}/lib/libdivsufsort64.a
ifeq (${jemalloc},on)
basicLibs += ${jemallocPath}/lib/libjemalloc.a
Expand All @@ -46,7 +46,7 @@ basicLibsDependencies := ${basicLibs}
# hal's hdf5Filters.cpp implements custom HDF5 lz4/zstd codecs, so libHal.a now
# carries LZ4_/ZSTD_ references. h5c++'s wrapper config doesn't pull these in,
# so every binary linking libHal.a needs them spelled out.
basicLibs += -llz4 -lzstd
basicLibs += -llz4 -lzstd -ljansson

# hdf5 compilation is done through its wrappers.
# we can speficy our own (sonlib) compilers with these variables:
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