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Merged
adamnovak merged 7 commits into from
Oct 16, 2026
Merged

Update tutorial #245

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4910899
Change tutorial to use a bidirected graph instead of a directed graph
xchang1 Oct 12, 2026
5ccef13
Fix hyperlinks maybe
xchang1 Oct 12, 2026
7c0293e
Add section on PositionOverlay
xchang1 Oct 12, 2026
1e6ea38
Add distance index example
xchang1 Oct 12, 2026
b5f08ed
Add more distance index tutorial
xchang1 Oct 13, 2026
e422121
Update python bindings
xchang1 Oct 13, 2026
6c15139
Make tutorial compile
xchang1 Oct 13, 2026
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4 changes: 2 additions & 2 deletions bdsg/cmake_bindings/bdsg/graph_proxy.cpp
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Original file line number Diff line number Diff line change
@@ -1,4 +1,3 @@
#include <__ostream/basic_ostream.h>
#include <bdsg/graph_proxy.hpp>
#include <bdsg/internal/base_packed_graph.hpp>
#include <bdsg/internal/graph_proxy_handle_graph_fragment.classfragment>
Expand All @@ -10,11 +9,12 @@
#include <handlegraph/types.hpp>
#include <ios>
#include <istream>
#include <iterator>
#include <memory>
#include <ostream>
#include <sstream> // __str__
#include <streambuf>
#include <string>
#include <string_view>
#include <unordered_set>
#include <utility>
#include <vector>
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4 changes: 2 additions & 2 deletions bdsg/cmake_bindings/bdsg/graph_proxy_1.cpp
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@@ -1,4 +1,3 @@
#include <__ostream/basic_ostream.h>
#include <bdsg/graph_proxy.hpp>
#include <bdsg/internal/base_packed_graph.hpp>
#include <bdsg/internal/graph_proxy_handle_graph_fragment.classfragment>
Expand All @@ -10,11 +9,12 @@
#include <handlegraph/types.hpp>
#include <ios>
#include <istream>
#include <iterator>
#include <memory>
#include <ostream>
#include <sstream> // __str__
#include <streambuf>
#include <string>
#include <string_view>
#include <utility>
#include <vector>

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4 changes: 2 additions & 2 deletions bdsg/cmake_bindings/bdsg/internal/base_packed_graph.cpp
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@@ -1,15 +1,15 @@
#include <__ostream/basic_ostream.h>
#include <bdsg/internal/base_packed_graph.hpp>
#include <bdsg/internal/mapped_structs.hpp>
#include <functional>
#include <handlegraph/types.hpp>
#include <ios>
#include <istream>
#include <iterator>
#include <memory>
#include <ostream>
#include <sstream> // __str__
#include <streambuf>
#include <string>
#include <string_view>
#include <unordered_map>
#include <unordered_set>
#include <utility>
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2 changes: 1 addition & 1 deletion bdsg/cmake_bindings/bdsg/internal/eades_algorithm.cpp
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Expand Up @@ -2,9 +2,9 @@
#include <functional>
#include <handlegraph/handle_graph.hpp>
#include <handlegraph/types.hpp>
#include <iterator>
#include <memory>
#include <string>
#include <string_view>
#include <utility>
#include <vector>

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7 changes: 6 additions & 1 deletion bdsg/cmake_bindings/bdsg/internal/hash_map.cpp
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Expand Up @@ -13,11 +13,11 @@
#include <handlegraph/types.hpp>
#include <ios>
#include <istream>
#include <iterator>
#include <memory>
#include <sstream> // __str__
#include <streambuf>
#include <string>
#include <string_view>
#include <utility>
#include <vector>

Expand Down Expand Up @@ -1041,6 +1041,11 @@ void bind_bdsg_internal_hash_map(std::function< pybind11::module &(std::string c
cl.def( pybind11::init( [](){ return new bdsg::wang_hash<long long,void>(); } ) );
cl.def("__call__", (unsigned long (bdsg::wang_hash<long long,void>::*)(const long long &) const) &bdsg::wang_hash<long long>::operator(), "C++: bdsg::wang_hash<long long>::operator()(const long long &) const --> unsigned long", pybind11::arg("x"));
}
{ // bdsg::wang_hash file:bdsg/internal/hash_map.hpp line:120
pybind11::class_<bdsg::wang_hash<long,void>, std::shared_ptr<bdsg::wang_hash<long,void>>> cl(M("bdsg"), "wang_hash_long_void_t", "");
cl.def( pybind11::init( [](){ return new bdsg::wang_hash<long,void>(); } ) );
cl.def("__call__", (unsigned long (bdsg::wang_hash<long,void>::*)(const long &) const) &bdsg::wang_hash<long>::operator(), "C++: bdsg::wang_hash<long>::operator()(const long &) const --> unsigned long", pybind11::arg("x"));
}
{ // bdsg::wang_hash file:bdsg/internal/hash_map.hpp line:120
pybind11::class_<bdsg::wang_hash<char,void>, std::shared_ptr<bdsg::wang_hash<char,void>>> cl(M("bdsg"), "wang_hash_char_void_t", "");
cl.def( pybind11::init( [](){ return new bdsg::wang_hash<char,void>(); } ) );
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2 changes: 1 addition & 1 deletion bdsg/cmake_bindings/bdsg/internal/is_single_stranded.cpp
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Expand Up @@ -2,9 +2,9 @@
#include <functional>
#include <handlegraph/handle_graph.hpp>
#include <handlegraph/types.hpp>
#include <iterator>
#include <memory>
#include <string>
#include <string_view>
#include <utility>
#include <vector>

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26 changes: 13 additions & 13 deletions bdsg/cmake_bindings/bdsg/internal/mapped_structs_1.cpp
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@@ -1,8 +1,8 @@
#include <__ostream/basic_ostream.h>
#include <bdsg/internal/mapped_structs.hpp>
#include <bdsg/internal/packed_structs.hpp>
#include <ios>
#include <istream>
#include <ostream>
#include <sstream> // __str__
#include <streambuf>
#include <string>
Expand Down Expand Up @@ -50,18 +50,18 @@ void bind_bdsg_internal_mapped_structs_1(std::function< pybind11::module &(std::
pybind11::class_<bdsg::IntVectorFor<bdsg::CompatBackend>, std::shared_ptr<bdsg::IntVectorFor<bdsg::CompatBackend>>> cl(M("bdsg"), "IntVectorFor_bdsg_CompatBackend_t", "");
cl.def( pybind11::init( [](){ return new bdsg::IntVectorFor<bdsg::CompatBackend>(); } ) );
}
{ // bdsg::PackedDeque file:bdsg/internal/packed_structs.hpp line:404
{ // bdsg::PackedDeque file:bdsg/internal/packed_structs.hpp line:410
pybind11::class_<bdsg::PackedDeque<bdsg::STLBackend>, std::shared_ptr<bdsg::PackedDeque<bdsg::STLBackend>>> cl(M("bdsg"), "PackedDeque_bdsg_STLBackend_t", "");
cl.def( pybind11::init( [](){ return new bdsg::PackedDeque<bdsg::STLBackend>(); } ) );
cl.def( pybind11::init( [](bdsg::PackedDeque<bdsg::STLBackend> const &o){ return new bdsg::PackedDeque<bdsg::STLBackend>(o); } ) );
cl.def("assign", (class bdsg::PackedDeque<> & (bdsg::PackedDeque<bdsg::STLBackend>::*)(const class bdsg::PackedDeque<> &)) &bdsg::PackedDeque<>::operator=, "C++: bdsg::PackedDeque<>::operator=(const class bdsg::PackedDeque<> &) --> class bdsg::PackedDeque<> &", pybind11::return_value_policy::automatic, pybind11::arg("other"));
cl.def("set", (void (bdsg::PackedDeque<bdsg::STLBackend>::*)(const unsigned long &, const unsigned long long &)) &bdsg::PackedDeque<>::set, "C++: bdsg::PackedDeque<>::set(const unsigned long &, const unsigned long long &) --> void", pybind11::arg("i"), pybind11::arg("value"));
cl.def("get", (unsigned long long (bdsg::PackedDeque<bdsg::STLBackend>::*)(const unsigned long &) const) &bdsg::PackedDeque<>::get, "C++: bdsg::PackedDeque<>::get(const unsigned long &) const --> unsigned long long", pybind11::arg("i"));
cl.def("__getitem__", (unsigned long long (bdsg::PackedDeque<bdsg::STLBackend>::*)(unsigned long) const) &bdsg::PackedDeque<>::operator[], "C++: bdsg::PackedDeque<>::operator[](unsigned long) const --> unsigned long long", pybind11::arg("i"));
cl.def("push_front", (void (bdsg::PackedDeque<bdsg::STLBackend>::*)(const unsigned long long &)) &bdsg::PackedDeque<>::push_front, "C++: bdsg::PackedDeque<>::push_front(const unsigned long long &) --> void", pybind11::arg("value"));
cl.def("append_front", (void (bdsg::PackedDeque<bdsg::STLBackend>::*)(const unsigned long long &)) &bdsg::PackedDeque<>::append_front, "C++: bdsg::PackedDeque<>::append_front(const unsigned long long &) --> void", pybind11::arg("value"));
cl.def("push_back", (void (bdsg::PackedDeque<bdsg::STLBackend>::*)(const unsigned long long &)) &bdsg::PackedDeque<>::push_back, "C++: bdsg::PackedDeque<>::push_back(const unsigned long long &) --> void", pybind11::arg("value"));
cl.def("append_back", (void (bdsg::PackedDeque<bdsg::STLBackend>::*)(const unsigned long long &)) &bdsg::PackedDeque<>::append_back, "C++: bdsg::PackedDeque<>::append_back(const unsigned long long &) --> void", pybind11::arg("value"));
cl.def("set", (void (bdsg::PackedDeque<bdsg::STLBackend>::*)(const unsigned long &, const unsigned long &)) &bdsg::PackedDeque<>::set, "C++: bdsg::PackedDeque<>::set(const unsigned long &, const unsigned long &) --> void", pybind11::arg("i"), pybind11::arg("value"));
cl.def("get", (unsigned long (bdsg::PackedDeque<bdsg::STLBackend>::*)(const unsigned long &) const) &bdsg::PackedDeque<>::get, "C++: bdsg::PackedDeque<>::get(const unsigned long &) const --> unsigned long", pybind11::arg("i"));
cl.def("__getitem__", (unsigned long (bdsg::PackedDeque<bdsg::STLBackend>::*)(unsigned long) const) &bdsg::PackedDeque<>::operator[], "C++: bdsg::PackedDeque<>::operator[](unsigned long) const --> unsigned long", pybind11::arg("i"));
cl.def("push_front", (void (bdsg::PackedDeque<bdsg::STLBackend>::*)(const unsigned long &)) &bdsg::PackedDeque<>::push_front, "C++: bdsg::PackedDeque<>::push_front(const unsigned long &) --> void", pybind11::arg("value"));
cl.def("append_front", (void (bdsg::PackedDeque<bdsg::STLBackend>::*)(const unsigned long &)) &bdsg::PackedDeque<>::append_front, "C++: bdsg::PackedDeque<>::append_front(const unsigned long &) --> void", pybind11::arg("value"));
cl.def("push_back", (void (bdsg::PackedDeque<bdsg::STLBackend>::*)(const unsigned long &)) &bdsg::PackedDeque<>::push_back, "C++: bdsg::PackedDeque<>::push_back(const unsigned long &) --> void", pybind11::arg("value"));
cl.def("append_back", (void (bdsg::PackedDeque<bdsg::STLBackend>::*)(const unsigned long &)) &bdsg::PackedDeque<>::append_back, "C++: bdsg::PackedDeque<>::append_back(const unsigned long &) --> void", pybind11::arg("value"));
cl.def("pop_front", (void (bdsg::PackedDeque<bdsg::STLBackend>::*)()) &bdsg::PackedDeque<>::pop_front, "C++: bdsg::PackedDeque<>::pop_front() --> void");
cl.def("pop_back", (void (bdsg::PackedDeque<bdsg::STLBackend>::*)()) &bdsg::PackedDeque<>::pop_back, "C++: bdsg::PackedDeque<>::pop_back() --> void");
cl.def("reserve", (void (bdsg::PackedDeque<bdsg::STLBackend>::*)(const unsigned long &)) &bdsg::PackedDeque<>::reserve, "C++: bdsg::PackedDeque<>::reserve(const unsigned long &) --> void", pybind11::arg("future_size"));
Expand All @@ -70,14 +70,14 @@ void bind_bdsg_internal_mapped_structs_1(std::function< pybind11::module &(std::
cl.def("clear", (void (bdsg::PackedDeque<bdsg::STLBackend>::*)()) &bdsg::PackedDeque<>::clear, "C++: bdsg::PackedDeque<>::clear() --> void");
cl.def("memory_usage", (unsigned long (bdsg::PackedDeque<bdsg::STLBackend>::*)() const) &bdsg::PackedDeque<>::memory_usage, "C++: bdsg::PackedDeque<>::memory_usage() const --> unsigned long");
}
{ // bdsg::PackedSet file:bdsg/internal/packed_structs.hpp line:513
{ // bdsg::PackedSet file:bdsg/internal/packed_structs.hpp line:519
pybind11::class_<bdsg::PackedSet<bdsg::STLBackend>, std::shared_ptr<bdsg::PackedSet<bdsg::STLBackend>>> cl(M("bdsg"), "PackedSet_bdsg_STLBackend_t", "");
cl.def( pybind11::init( [](){ return new bdsg::PackedSet<bdsg::STLBackend>(); } ) );
cl.def( pybind11::init( [](bdsg::PackedSet<bdsg::STLBackend> const &o){ return new bdsg::PackedSet<bdsg::STLBackend>(o); } ) );
cl.def("assign", (class bdsg::PackedSet<> & (bdsg::PackedSet<bdsg::STLBackend>::*)(const class bdsg::PackedSet<> &)) &bdsg::PackedSet<>::operator=, "C++: bdsg::PackedSet<>::operator=(const class bdsg::PackedSet<> &) --> class bdsg::PackedSet<> &", pybind11::return_value_policy::automatic, pybind11::arg("other"));
cl.def("insert", (void (bdsg::PackedSet<bdsg::STLBackend>::*)(const unsigned long long &)) &bdsg::PackedSet<>::insert, "C++: bdsg::PackedSet<>::insert(const unsigned long long &) --> void", pybind11::arg("value"));
cl.def("find", (bool (bdsg::PackedSet<bdsg::STLBackend>::*)(const unsigned long long &) const) &bdsg::PackedSet<>::find, "C++: bdsg::PackedSet<>::find(const unsigned long long &) const --> bool", pybind11::arg("value"));
cl.def("remove", (void (bdsg::PackedSet<bdsg::STLBackend>::*)(const unsigned long long &)) &bdsg::PackedSet<>::remove, "C++: bdsg::PackedSet<>::remove(const unsigned long long &) --> void", pybind11::arg("value"));
cl.def("insert", (void (bdsg::PackedSet<bdsg::STLBackend>::*)(const unsigned long &)) &bdsg::PackedSet<>::insert, "C++: bdsg::PackedSet<>::insert(const unsigned long &) --> void", pybind11::arg("value"));
cl.def("find", (bool (bdsg::PackedSet<bdsg::STLBackend>::*)(const unsigned long &) const) &bdsg::PackedSet<>::find, "C++: bdsg::PackedSet<>::find(const unsigned long &) const --> bool", pybind11::arg("value"));
cl.def("remove", (void (bdsg::PackedSet<bdsg::STLBackend>::*)(const unsigned long &)) &bdsg::PackedSet<>::remove, "C++: bdsg::PackedSet<>::remove(const unsigned long &) --> void", pybind11::arg("value"));
cl.def("size", (unsigned long (bdsg::PackedSet<bdsg::STLBackend>::*)() const) &bdsg::PackedSet<>::size, "C++: bdsg::PackedSet<>::size() const --> unsigned long");
cl.def("empty", (bool (bdsg::PackedSet<bdsg::STLBackend>::*)() const) &bdsg::PackedSet<>::empty, "C++: bdsg::PackedSet<>::empty() const --> bool");
cl.def("set_load_factors", (void (bdsg::PackedSet<bdsg::STLBackend>::*)(double, double)) &bdsg::PackedSet<>::set_load_factors, "C++: bdsg::PackedSet<>::set_load_factors(double, double) --> void", pybind11::arg("min_load_factor"), pybind11::arg("max_load_factor"));
Expand Down
2 changes: 1 addition & 1 deletion bdsg/cmake_bindings/bdsg/overlays/packed_path_position_overlay.cpp
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Expand Up @@ -5,10 +5,10 @@
#include <handlegraph/path_metadata.hpp>
#include <handlegraph/path_position_handle_graph.hpp>
#include <handlegraph/types.hpp>
#include <iterator>
#include <memory>
#include <sstream> // __str__
#include <string>
#include <string_view>
#include <unordered_map>
#include <unordered_set>
#include <utility>
Expand Down
2 changes: 1 addition & 1 deletion bdsg/cmake_bindings/bdsg/overlays/packed_reference_path_overlay.cpp
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Expand Up @@ -8,10 +8,10 @@
#include <handlegraph/path_metadata.hpp>
#include <handlegraph/path_position_handle_graph.hpp>
#include <handlegraph/types.hpp>
#include <iterator>
#include <memory>
#include <sstream> // __str__
#include <string>
#include <string_view>
#include <unordered_map>
#include <unordered_set>
#include <utility>
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2 changes: 1 addition & 1 deletion bdsg/cmake_bindings/bdsg/overlays/path_position_overlays.cpp
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Expand Up @@ -11,10 +11,10 @@
#include <handlegraph/path_metadata.hpp>
#include <handlegraph/path_position_handle_graph.hpp>
#include <handlegraph/types.hpp>
#include <iterator>
#include <memory>
#include <sstream> // __str__
#include <string>
#include <string_view>
#include <unordered_map>
#include <unordered_set>
#include <utility>
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4 changes: 1 addition & 3 deletions bdsg/cmake_bindings/bdsg/overlays/path_subgraph_overlay.cpp
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Expand Up @@ -5,12 +5,10 @@
#include <handlegraph/path_handle_graph.hpp>
#include <handlegraph/path_metadata.hpp>
#include <handlegraph/types.hpp>
#include <iterator>
#include <memory>
#include <sstream> // __str__
#include <string>
#include <string_view>
#include <unordered_map>
#include <unordered_set>
#include <utility>
#include <vector>

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2 changes: 1 addition & 1 deletion bdsg/cmake_bindings/bdsg/overlays/reference_path_overlay.cpp
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Expand Up @@ -6,10 +6,10 @@
#include <handlegraph/path_metadata.hpp>
#include <handlegraph/path_position_handle_graph.hpp>
#include <handlegraph/types.hpp>
#include <iterator>
#include <memory>
#include <sstream> // __str__
#include <string>
#include <string_view>
#include <unordered_map>
#include <unordered_set>
#include <utility>
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2 changes: 1 addition & 1 deletion bdsg/cmake_bindings/bdsg/overlays/strand_split_overlay.cpp
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Expand Up @@ -2,10 +2,10 @@
#include <functional>
#include <handlegraph/handle_graph.hpp>
#include <handlegraph/types.hpp>
#include <iterator>
#include <memory>
#include <sstream> // __str__
#include <string>
#include <string_view>
#include <utility>

#include <functional>
Expand Down
2 changes: 1 addition & 1 deletion bdsg/cmake_bindings/bdsg/overlays/vectorizable_overlays.cpp
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Expand Up @@ -5,10 +5,10 @@
#include <handlegraph/path_metadata.hpp>
#include <handlegraph/path_position_handle_graph.hpp>
#include <handlegraph/types.hpp>
#include <iterator>
#include <memory>
#include <sstream> // __str__
#include <string>
#include <string_view>
#include <utility>
#include <vector>

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4 changes: 2 additions & 2 deletions bdsg/cmake_bindings/bdsg/packed_graph.cpp
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@@ -1,4 +1,3 @@
#include <__ostream/basic_ostream.h>
#include <bdsg/internal/base_packed_graph.hpp>
#include <bdsg/internal/graph_proxy_handle_graph_fragment.classfragment>
#include <bdsg/internal/graph_proxy_mutable_path_deletable_handle_graph_fragment.classfragment>
Expand All @@ -11,11 +10,12 @@
#include <handlegraph/types.hpp>
#include <ios>
#include <istream>
#include <iterator>
#include <memory>
#include <ostream>
#include <sstream> // __str__
#include <streambuf>
#include <string>
#include <string_view>
#include <unordered_map>
#include <unordered_set>
#include <utility>
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4 changes: 2 additions & 2 deletions bdsg/cmake_bindings/bdsg/snarl_distance_index.cpp
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@@ -1,4 +1,3 @@
#include <__ostream/basic_ostream.h>
#include <bdsg/snarl_distance_index.hpp>
#include <functional>
#include <handlegraph/handle_graph.hpp>
Expand All @@ -7,11 +6,12 @@
#include <handlegraph/types.hpp>
#include <ios>
#include <istream>
#include <iterator>
#include <memory>
#include <ostream>
#include <sstream> // __str__
#include <streambuf>
#include <string>
#include <string_view>
#include <tuple>
#include <utility>

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2 changes: 1 addition & 1 deletion bdsg/cmake_bindings/handlegraph/expanding_overlay_graph.cpp
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Expand Up @@ -2,10 +2,10 @@
#include <handlegraph/expanding_overlay_graph.hpp>
#include <handlegraph/handle_graph.hpp>
#include <handlegraph/types.hpp>
#include <iterator>
#include <memory>
#include <sstream> // __str__
#include <string>
#include <string_view>

#include <functional>
#include <pybind11/pybind11.h>
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2 changes: 1 addition & 1 deletion bdsg/cmake_bindings/handlegraph/handle_graph.cpp
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@@ -1,10 +1,10 @@
#include <functional>
#include <handlegraph/handle_graph.hpp>
#include <handlegraph/types.hpp>
#include <iterator>
#include <memory>
#include <sstream> // __str__
#include <string>
#include <string_view>
#include <utility>

#include <functional>
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2 changes: 1 addition & 1 deletion bdsg/cmake_bindings/handlegraph/mutable_path_metadata.cpp
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Expand Up @@ -6,10 +6,10 @@
#include <handlegraph/path_handle_graph.hpp>
#include <handlegraph/path_metadata.hpp>
#include <handlegraph/types.hpp>
#include <iterator>
#include <memory>
#include <sstream> // __str__
#include <string>
#include <string_view>
#include <utility>
#include <vector>

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4 changes: 2 additions & 2 deletions bdsg/cmake_bindings/handlegraph/mutable_path_mutable_handle_graph.cpp
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@@ -1,4 +1,3 @@
#include <__ostream/basic_ostream.h>
#include <functional>
#include <handlegraph/deletable_handle_graph.hpp>
#include <handlegraph/handle_graph.hpp>
Expand All @@ -14,11 +13,12 @@
#include <handlegraph/types.hpp>
#include <ios>
#include <istream>
#include <iterator>
#include <memory>
#include <ostream>
#include <sstream> // __str__
#include <streambuf>
#include <string>
#include <string_view>
#include <utility>
#include <vector>

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2 changes: 1 addition & 1 deletion bdsg/cmake_bindings/handlegraph/path_handle_graph.cpp
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Expand Up @@ -3,10 +3,10 @@
#include <handlegraph/path_handle_graph.hpp>
#include <handlegraph/snarl_decomposition.hpp>
#include <handlegraph/types.hpp>
#include <iterator>
#include <memory>
#include <sstream> // __str__
#include <string>
#include <string_view>
#include <utility>

#include <functional>
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2 changes: 1 addition & 1 deletion bdsg/cmake_bindings/handlegraph/path_metadata.cpp
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Expand Up @@ -3,10 +3,10 @@
#include <handlegraph/path_handle_graph.hpp>
#include <handlegraph/path_metadata.hpp>
#include <handlegraph/types.hpp>
#include <iterator>
#include <memory>
#include <sstream> // __str__
#include <string>
#include <string_view>
#include <utility>
#include <vector>

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2 changes: 1 addition & 1 deletion bdsg/cmake_bindings/handlegraph/path_position_handle_graph.cpp
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Expand Up @@ -4,10 +4,10 @@
#include <handlegraph/path_metadata.hpp>
#include <handlegraph/path_position_handle_graph.hpp>
#include <handlegraph/types.hpp>
#include <iterator>
#include <memory>
#include <sstream> // __str__
#include <string>
#include <string_view>
#include <utility>
#include <vector>

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4 changes: 2 additions & 2 deletions bdsg/cmake_bindings/handlegraph/trivially_serializable.cpp
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@@ -1,13 +1,13 @@
#include <__ostream/basic_ostream.h>
#include <functional>
#include <handlegraph/trivially_serializable.hpp>
#include <ios>
#include <istream>
#include <iterator>
#include <memory>
#include <ostream>
#include <sstream> // __str__
#include <streambuf>
#include <string>
#include <string_view>

#include <functional>
#include <pybind11/pybind11.h>
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1 change: 1 addition & 0 deletions bdsg/cmake_bindings/std/bdsg/internal/binder_hook_bind.cpp
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@@ -1,4 +1,5 @@
#include <handlegraph/types.hpp>
#include <iterator>
#include <memory>
#include <sstream> // __str__
#include <stl_binders.hpp>
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