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@stjude

St. Jude Children's Research Hospital

Finding Cures, Saving Children.

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  1. learngenomics.dev learngenomics.dev Public

    A guided, intuitive introduction to genomics for software engineers. Curated by the community.

    Python 482 41

  2. ROSE ROSE Public

    ROSE: RANK ORDERING OF SUPER-ENHANCERS

    Python 74 20

  3. proteinpaint proteinpaint Public

    Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.

    TypeScript 58 15

  4. CICERO CICERO Public

    CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

    Perl 45 23

  5. ChIPseqSpikeInFree ChIPseqSpikeInFree Public

    A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications

    R 44 13

  6. RNAIndel RNAIndel Public

    Somatic indel discovery tool for tumor RNA-Seq data.

    Python 24 8

Repositories

Showing 10 of 58 repositories
  • proteinpaint Public

    Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.

    stjude/proteinpaint's past year of commit activity
    TypeScript 58 15 91 3 Updated Nov 13, 2026
  • icore-image Public
    stjude/icore-image's past year of commit activity
    Python 5 1 3 6 Updated Nov 12, 2026
  • MyGPT Public

    A privacy-first, open-source Retrieval-Augmented Generation platform with real-time confidence metrics and source highlighting

    stjude/MyGPT's past year of commit activity
    TypeScript 5 GPL-3.0 0 5 8 Updated Nov 12, 2026
  • learngenomics.dev Public

    A guided, intuitive introduction to genomics for software engineers. Curated by the community.

    stjude/learngenomics.dev's past year of commit activity
    Python 482 41 0 0 Updated Nov 12, 2026
  • RNAIndel Public

    Somatic indel discovery tool for tumor RNA-Seq data.

    stjude/RNAIndel's past year of commit activity
    Python 24 Apache-2.0 8 0 0 Updated Nov 11, 2026
  • zFISHer Public
    stjude/zFISHer's past year of commit activity
    Python 1 MIT 1 0 0 Updated Nov 11, 2026
  • dicom-viewer Public

    DIcom Viewer

    stjude/dicom-viewer's past year of commit activity
    TypeScript 0 MIT 0 0 0 Updated Oct 28, 2026
  • RNApeg Public

    RNA junction finder

    stjude/RNApeg's past year of commit activity
    Perl 4 Apache-2.0 2 2 0 Updated Oct 22, 2026
  • CICERO Public

    CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

    stjude/CICERO's past year of commit activity
    Perl 45 23 7 1 Updated Sep 30, 2026
  • comet Public

    Comet Publication

    stjude/comet's past year of commit activity
    R 0 0 0 0 Updated Sep 10, 2026