Repositories list

• ATACPrimerTool

  Public
  Primer design for ATAC-qPCR

  Python

  •77 forks in ChangLab/ATACPrimerTool•1313 stars in ChangLab/ATACPrimerTool•33 issues in ChangLab/ATACPrimerTool•00 pull requests in ChangLab/ATACPrimerTool•Updated Jan 11, 2022Jan 11, 2022

• ecDNA-hub-code-2021

  Public
  Code for Hung*, Yost*, Xie*, et al. ecDNA hubs drive cooperative intermolecular oncogene expression (2021).

  R

  •00 forks in ChangLab/ecDNA-hub-code-2021•66 stars in ChangLab/ecDNA-hub-code-2021•00 issues in ChangLab/ecDNA-hub-code-2021•00 pull requests in ChangLab/ecDNA-hub-code-2021•Updated Nov 22, 2021Nov 22, 2021

• TCGA_PEPATAC

  Public
  A repository containing the PEP files used for analyzing the TCGA bulk ATAC-seq data

  MIT License

  •00 forks in ChangLab/TCGA_PEPATAC•22 stars in ChangLab/TCGA_PEPATAC•00 issues in ChangLab/TCGA_PEPATAC•00 pull requests in ChangLab/TCGA_PEPATAC•Updated Nov 4, 2021Nov 4, 2021

• ATAC_mito_sc

  Public
  single cell ATACseq pipeline

  Shell

  •

  GNU General Public License v3.0

  •1414 forks in ChangLab/ATAC_mito_sc•88 stars in ChangLab/ATAC_mito_sc•33 issues in ChangLab/ATAC_mito_sc•11 pull request in ChangLab/ATAC_mito_sc•Updated Jul 10, 2021Jul 10, 2021

• EMBLEM

  Public
  Perl

  •11 fork in ChangLab/EMBLEM•33 stars in ChangLab/EMBLEM•00 issues in ChangLab/EMBLEM•00 pull requests in ChangLab/EMBLEM•Updated Dec 7, 2018Dec 7, 2018

• pypiper

  Public
  Python toolkit for building restartable pipelines

  Python

  •88 forks in ChangLab/pypiper•00 stars in ChangLab/pypiper•00 issues in ChangLab/pypiper•00 pull requests in ChangLab/pypiper•Updated Dec 13, 2017Dec 13, 2017

• FAST-iCLIP

  Public
  Fully Automated and Standardized (FAST) iCLIP analysis pipeline.

  Jupyter Notebook

  •

  GNU General Public License v2.0

  •1717 forks in ChangLab/FAST-iCLIP•2121 stars in ChangLab/FAST-iCLIP•2121 issues in ChangLab/FAST-iCLIP•00 pull requests in ChangLab/FAST-iCLIP•Updated Oct 7, 2017Oct 7, 2017