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mirikrupkin.github.io
mirikrupkin.github.io PublicAcademic portfolio and software hub of Dr. Miri Krupkin | Computational Biologist specializing in structural AI, RNA viruses, and drug-target interactions.
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structural-ai-validation-suite
structural-ai-validation-suite PublicProduction-grade structural benchmarking and repository for manual AlphaFold predictions, multi-chain assembly parsing, and biophysical model integrity validation.
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foldcheck-pro
foldcheck-pro PublicAn automated biophysical validation and alignment suite for AI-generated protein models, featuring RASA classification and Hungarian algorithm chain pairing.
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foldcheck-rna
foldcheck-rna PublicAn automated biophysical validation and alignment suite for AI-generated RNA models, featuring stoichiometry-aware monomer isolation, pLDDT confidence parsing, RNA modification-aware mapping, and z…
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inspectrna
inspectrna PublicInteractive 3D viewer and open repository of isolated viral regulatory RNA structures from the PDB, paired side by side with Boltz-2 predictions and RMSD, US-align and pLDDT metrics.
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