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apache
ctakes
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Creating Pipelines
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Sean Finan edited this page
Feb 9, 2026
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Wiki pages
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Home
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AbstractPatientConsumer
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AbstractPatientFileWriter
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Annotation Engines
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Basics
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CalendarUtil
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Citation
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clinical pipeline desc
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Code Modules
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Collection Readers
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ConceptBuilder
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constit parser desc
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context token desc
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core_desc
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coreference_desc
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Creating Pipelines
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ctakes assertion
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ctakes assertion zoner
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ctakes chunker
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ctakes clinical pipeline
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ctakes constituency parser
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ctakes context tokenizer
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ctakes core
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ctakes core models
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ctakes coreference
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ctakes default clinical pipeline
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ctakes dependency parser
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ctakes dictionary lookup
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ctakes dictionary lookup fast
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ctakes distribution
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ctakes dockhand
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ctakes drug ner
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ctakes examples
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ctakes examples ctakes_cnlpt_py
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ctakes examples ctakes_cnlpt_py
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ctakes fhir
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ctakes gui
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ctakes lvg
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ctakes mastif zoner
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ctakes ne contexts
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ctakes pbj
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ctakes pbj and ctakes cnlpt examples
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ctakes pos tagger
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ctakes preprocessor
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ctakes regression test
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ctakes relation extractor
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ctakes side effect
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ctakes smoking status
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ctakes template filler
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ctakes temporal
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ctakes tiny rest
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ctakes type system
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cTAKES UMLS Package Fetcher
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ctakes utils
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ctakes web rest
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ctakes ytex
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ctakes ytex uima
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ctakes ytex web
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DefaultAspanComparator
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DefaultSpanComparator
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DefaultTextSpan
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dependency_parser_desc
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dict lookup fast desc
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Dictionary Creator
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Differences between 4.0 and 5.0
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Differences between 5.0 and 6.0
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dist desc
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DocIdUtil
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DotLogger
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drug ner desc
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Essential Modules
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EssentialAnnotationUtil
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Example Collection Reader
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FileLocator
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FinishedLogger
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Get Involved
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Getting Started with PBJ
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getting_started_with_pbj
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history
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IdentifiedAnnotationBuilder
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IdentifiedAnnotationUtil
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Installation Facility
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Introduction to Code
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Introduction to Pipelines
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Issue 1
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Issue 2
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JCasBuilder
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Mailing Lists
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MutableUimaContext
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ne_contexts_desc
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NumberedSuffixComparator
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OntologyConceptUtil
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Output Writers
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Overview of Chunker
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Pair
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PatientNoteCollector
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PatientNoteStore
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PatientViewUtil
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pbj_component
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pbj_examples
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pbj_pipeline
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pbj_scripts
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pbj_tools
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pbj_type_system
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pbj_user_pipeline
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PipeBitLocator
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Pipeline Components
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Pipeline Diagrams
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Pipeline List
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PipelineBuilder
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Piper Commands
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Piper File Submitter
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Piper Files
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PiperFileReader
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PiperFileRunner
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Planned for 7.0
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POS Tagger
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pos_tagger_desc
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RegexSpanFinder
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relation extractor desc
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RelationArgumentUtil
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Running a Pipeline
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SemanticGroup
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SemanticTui
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Shell Scripts
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side_effect_desc
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Simple Pipeline Fabricator
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smoking status desc
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StringUtil
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temporal desc
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TextBySectionBuilder
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TextBySentenceBuilder
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TextSpan
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TimeoutMatcher
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Trouble shooting PBJ
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Utilities
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Videos
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web rest desc
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Show 123 more pages…
Home
Pipeline Basics
Introduction to Pipelines
Included Pipelines
Pipeline Diagrams
Piper Files
Introduction to Piper Files
Piper Commands
Setting a Collection Reader
Adding an Annotator
Setting Variable Values
Loading external Piper Files
Specifying Folders/Packages
Using Variable Value Substitution
Running Pipelines
Running a Pipeline
Piper File Submitter GUI
Piper File Run Scripts
PiperFileRunner Java Class
PipelineBuilder Java Class
Creating Custom Pipelines
Creating Pipelines
Manual Pipeline Creation
Simple Pipeline Fabricator
Pipeline Installation Facility
Pipeline Components
Pipeline Components
Collection Readers
Annotation Engines
Output Writers
Utilities
Creating Components
Collection Reader
Annotation Engine
Output Writer
General
History
Citation
License
Security
Get Involved
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